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1

Evaluation of High-Resolution Melting for Rapid Differentiation of Phytophthora Hybrids and Their Parental Species

Ratti, Maria F., Farrer, Rhys A., Cano, Liliana M., Faedda, Roberto, Goss, Erica M.

Journal:

Year:

2019

File:

PDF, 2.53 MB

2019

2

De novo assembly of the Pseudomonas syringae pv. syringae B728a genome using Illumina/Solexa short sequence reads

Rhys A. Farrer, Eric Kemen, Jonathan D.G. Jones, David J. Studholme

Journal:

FEMS Microbiology Letters

Year:

2009

Language:

english

File:

PDF, 935 KB

english, 2009

3

Nine Things Genomics Can Tell Us About Candida auris

Chybowska, Aleksandra D., Childers, Delma S., Farrer, Rhys A.

Journal:

Frontiers in Genetics

Year:

2020

File:

PDF, 2.08 MB

2020

4

Multiple emergences of genetically diverse amphibian-infecting chytrids include a globalized hypervirulent recombinant lineage

Rhys A. Farrer, Lucy A. Weinert, Jon Bielby, Trenton W. J. Garner, Francois Balloux, Frances Clare, Jaime Bosch, Andrew A. Cunningham, Che Weldon, Louis H. du Preez, Lucy Anderson, Sergei L. Kosakovsk

Journal:

Proceedings of the National Academy of Sciences

Year:

2011

Language:

english

File:

PDF, 1.40 MB

english, 2011

5

Genome Diversity, Recombination, and Virulence across the Major Lineages of Paracoccidioides

Muñoz, José F., Farrer, Rhys A., Desjardins, Christopher A., Gallo, Juan E., Sykes, Sean, Sakthikumar, Sharadha, Misas, Elizabeth, Whiston, Emily A., Bagagli, Eduardo, Soares, Celia M. A., Teixeira, M

Journal:

Year:

2016

Language:

english

File:

PDF, 1.63 MB

english, 2016

6

Microevolutionary traits and comparative population genomics of the emerging pathogenic fungus Cryptococcus gattii

Farrer, Rhys A., Voelz, Kerstin, Henk, Daniel A., Johnston, Simon A., Fisher, Matthew C., May, Robin C., Cuomo, Christina A.

Journal:

Philosophical Transactions Biological Sciences

Year:

2016

Language:

english

File:

PDF, 636 KB

english, 2016

7

[Advances in Genetics] Fungal Phylogenetics and Phylogenomics Volume 100 || Describing Genomic and Epigenomic Traits Underpinning Emerging Fungal Pathogens

Farrer, Rhys A.

Year:

2017

Language:

english

File:

PDF, 2.25 MB

english, 2017

8

Global analysis of mutations driving microevolution of a heterozygous diploid fungal pathogen

Ene, Iuliana V., Farrer, Rhys A., Hirakawa, Matthew P., Agwamba, Kennedy, Cuomo, Christina A., Bennett, Richard J.

Journal:

Proceedings of the National Academy of Sciences

Year:

2018

Language:

english

File:

PDF, 1.11 MB

english, 2018

9

Genome Analyses of an Aggressive and Invasive Lineage of the Irish Potato Famine Pathogen

Cooke, David E. L., Cano, Liliana M., Raffaele, Sylvain, Bain, Ruairidh A., Cooke, Louise R., Etherington, Graham J., Deahl, Kenneth L., Farrer, Rhys A., Gilroy, Eleanor M., Goss, Erica M., Grünwald,

Journal:

Year:

2012

Language:

english

File:

PDF, 1.02 MB

english, 2012

10

Ten things to know about oomycete effectors

SEBASTIAN SCHORNACK, EDGAR HUITEMA, LILIANA M. CANO, TOLGA O. BOZKURT, RICARDO OLIVA, MIREILLE VAN DAMME, SIMON SCHWIZER, SYLVAIN RAFFAELE, ANGELA CHAPARRO-GARCIA, RHYS FARRER, MARIA EUGENIA SEGRETIN,

Journal:

Molecular Plant Pathology

Year:

2009

Language:

english

File:

PDF, 438 KB

english, 2009

11

Recent Asian origin of chytrid fungi causing global amphibian declines

O’Hanlon, Simon J., Rieux, Adrien, Farrer, Rhys A., Rosa, Gonçalo M., Waldman, Bruce, Bataille, Arnaud, Kosch, Tiffany A., Murray, Kris A., Brankovics, Balázs, Fumagalli, Matteo, Martin, Michael D., W

Journal:

Year:

2018

Language:

english

File:

PDF, 4.07 MB

english, 2018

12

Genome Evolution and Innovation across the Four Major Lineages of Cryptococcus gattii

Farrer, Rhys A., Desjardins, Christopher A., Sakthikumar, Sharadha, Gujja, Sharvari, Saif, Sakina, Zeng, Qiandong, Chen, Yuan, Voelz, Kerstin, Heitman, Joseph, May, Robin C., Fisher, Matthew C., Cuomo

Journal:

Year:

2015

Language:

english

File:

PDF, 1.13 MB

english, 2015

13

A New Lineage of Cryptococcus gattii (VGV) Discovered in the Central Zambezian Miombo Woodlands

Farrer, Rhys A., Chang, Miwha, Davis, Michael J., van Dorp, Lucy, Yang, Dong-Hoon, Shea, Terrance, Sewell, Thomas R., Meyer, Wieland, Balloux, Francois, Edwards, Hannah M., Chanda, Duncan, Kwenda, Geo

Journal:

Year:

2019

File:

PDF, 4.97 MB

2019

14

Genomic innovations linked to infection strategies across emerging pathogenic chytrid fungi

Farrer, Rhys A., Martel, An, Verbrugghe, Elin, Abouelleil, Amr, Ducatelle, Richard, Longcore, Joyce E., James, Timothy Y., Pasmans, Frank, Fisher, Matthew C., Cuomo, Christina A.

Journal:

Nature Communications

Year:

2017

Language:

english

File:

PDF, 8.63 MB

english, 2017

15

MARDy: Mycology Antifungal Resistance Database

Nash, Anthony, Sewell, Thomas, Farrer, Rhys A, Abdolrasouli, Alireza, Shelton, Jennifer M G, Fisher, Matthew C, Rhodes, Johanna

Journal:

Year:

2018

Language:

english

File:

PDF, 113 KB

english, 2018

16

Rapid phenotypic evolution in multidrug-resistant Klebsiella pneumoniae hospital outbreak strains

van Dorp, Lucy, Wang, Qi, Shaw, Liam P., Acman, Mislav, Brynildsrud, Ola B., Eldholm, Vegard, Wang, Ruobing, Gao, Hua, Yin, Yuyao, Chen, Hongbin, Ding, Chuling, Farrer, Rhys A., Didelot, Xavier, Ballo

Journal:

Microbial Genomics

Year:

2019

Language:

english

File:

PDF, 3.00 MB

english, 2019

17

Comparative genomics of Fusarium oxysporum f. sp. melonis reveals the secreted protein recognized by the Fom-2 resistance gene in melon

Schmidt, Sarah Maria, Lukasiewicz, Joanna, Farrer, Rhys, van Dam, Peter, Bertoldo, Chiara, Rep, Martijn

Journal:

New Phytologist

Year:

2016

Language:

english

File:

PDF, 927 KB

english, 2016

18

Microevolution of Serial Clinical Isolates of Cryptococcus neoformans var. grubii and C. gattii

Chen, Yuan, Farrer, Rhys A., Giamberardino, Charles, Sakthikumar, Sharadha, Jones, Alexander, Yang, Timothy, Tenor, Jennifer L., Wagih, Omar, Van Wyk, Marelize, Govender, Nelesh P., Mitchell, Thomas G

Journal:

Year:

2017

Language:

english

File:

PDF, 1.67 MB

english, 2017

19

Development and worldwide use of non-lethal, and minimal population-level impact, protocols for the isolation of amphibian chytrid fungi

Fisher, Matthew C., Ghosh, Pria, Shelton, Jennifer M. G., Bates, Kieran, Brookes, Lola, Wierzbicki, Claudia, Rosa, Gonçalo M., Farrer, Rhys A., Aanensen, David M., Alvarado-Rybak, Mario, Bataille, Arn

Journal:

Scientific Reports

Year:

2018

Language:

english

File:

PDF, 1.44 MB

english, 2018

20

Genomic insights into multidrug-resistance, mating and virulence in Candida auris and related emerging species

Muñoz, José F., Gade, Lalitha, Chow, Nancy A., Loparev, Vladimir N., Juieng, Phalasy, Berkow, Elizabeth L., Farrer, Rhys A., Litvintseva, Anastasia P., Cuomo, Christina A.

Journal:

Nature Communications

Year:

2018

Language:

english

File:

PDF, 1.40 MB

english, 2018

21

Transmission of Hypervirulence Traits via Sexual Reproduction within and between Lineages of the Human Fungal Pathogen Cryptococcus gattii

Voelz, Kerstin, Ma, Hansong, Phadke, Sujal, Byrnes, Edmond J., Zhu, Pinkuan, Mueller, Olaf, Farrer, Rhys A., Henk, Daniel A., Lewit, Yonathan, Hsueh, Yen-Ping, Fisher, Matthew C., Idnurm, Alexander, H

Journal:

Year:

2013

Language:

english

File:

PDF, 2.57 MB

english, 2013

22

Zinc Cluster Transcription Factors Alter Virulence in Candida albicans

Issi, Luca, Farrer, Rhys A., Pastor, Kelly, Landry, Benjamin, Delorey, Toni, Bell, George W., Thompson, Dawn A., Cuomo, Christina A., Rao, Reeta P.

Journal:

Year:

2017

Language:

english

File:

PDF, 308 KB

english, 2017

23

Synima: a Synteny imaging tool for annotated genome assemblies

Farrer, Rhys A.

Journal:

BMC Bioinformatics

Year:

2017

Language:

english

File:

PDF, 1.49 MB

english, 2017

24

Chromosomal Copy Number Variation, Selection and Uneven Rates of Recombination Reveal Cryptic Genome Diversity Linked to Pathogenicity

Farrer, Rhys A., Henk, Daniel A., Garner, Trenton W. J., Balloux, Francois, Woodhams, Douglas C., Fisher, Matthew C., Heitman, Joseph

Journal:

Year:

2013

Language:

english

File:

PDF, 2.61 MB

english, 2013

25

Hsf1 and Hsp90 orchestrate temperature-dependent global transcriptional remodelling and chromatin architecture in Candida albicans

Leach, Michelle D., Farrer, Rhys A., Tan, Kaeling, Miao, Zhengqiang, Walker, Louise A., Cuomo, Christina A., Wheeler, Robert T., Brown, Alistair J. P., Wong, Koon Ho, Cowen, Leah E.

Journal:

Nature Communications

Year:

2016

Language:

english

File:

PDF, 2.68 MB

english, 2016

26

Genomic epidemiology of the UK outbreak of the emerging human fungal pathogen Candida auris

Rhodes, Johanna, Abdolrasouli, Alireza, Farrer, Rhys A., Cuomo, Christina A., Aanensen, David M., Armstrong-James, Darius, Fisher, Matthew C., Schelenz, Silke

Journal:

Emerging Microbes & Infections

Year:

2018

Language:

english

File:

PDF, 730 KB

english, 2018

27

Evaluation of High-Resolution Melting for Rapid Differentiation of Phytophthora Hybrids and Their Parental Species

Ratti, Maria F., Farrer, Rhys A., Cano, Liliana M., Faedda, Roberto, Goss, Erica M.

Journal:

Year:

2019

Language:

english

File:

PDF, 2.53 MB

english, 2019

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